Updates:
I've brought it in several more times to no success in repairs. They actually evidently swapped my window out for another "new" 2012 on the lot (which I find shady), and it didn't solve it. As this has aged, I have begun to notice that I think this is coming from the door panel - not the window. It's as though there's a leak coming from within the door panel. I hear it on very windy days, when a car passes me, and always hear the road noise, particularly at highway speeds. At 70 mph, its nearly unbearable as a driver with sensitive hearing.
The dealership hasn't been taking it seriously and my patience has waned. I involved American Honda and they are sending a specialist out. I told her I am done with this issue and the next time I drop the vehicle off for this issue, I do not want it back until it is fixed. If it cannot be fixed, I expect us to come to a reasonable solution or accomodation that appeases me. There is no excuse for this on a new car. I had a 2013 rental and frankly, the refinement is in a different league. For a car as loud as the 2012 interior is to begin with, I can handle. But an air leak on top of that - not acceptable.
I'll update more when I get my answers. I doubt this qualifies for a lemon law, but if it does, you can bet I'm going to do it. Is that crazy? Perhaps, but I believe strongly in sending messages, and I am not pleased with Honda's handling of the 2012 Civic compared to the 2013. And there's a bit of vengeance involved with that, I suppose. All I really want is the wind leak fixed and I'd be completely happy with the car, all things considered. I will get something out of this though, whether its a fix or compensation or settlement on some level.
A user on another forum created a web page (that is since under construction) detailing his db levels in his 2012 Civic LX coupe - he had db readings in excess of 90 db, and Honda admit there's nothing they could do. But, for what its worth, that is well above the healthy range. I'm curious to see what level mine runs at. Edmunds test shows that the Si at full throttle is approximately 67.4 db at 70 mph.